miRseqViewer

User Guide
- Genomes
- Quick start
- Installation
- Starting miRseqViewer
- Create a workspace
- User Interface
  - Main Window
  - MenuBar
  - ToolBar
  - Pop-up Menu
  - Preferences
- Project Management
  - New Project
    - By Standard Wizard
      - Create Project and Grouping and Loading Data
      - Choose organism
      - File Processing
      - Choose miRNA(s) to View
    - By Quick Wizard
  - Execute a miRseq project
  - Save a project
  - Export a project
  - Import a project
  - Delete a project/all projects
  - Print a project
- Project Explorer
- Alignment
  - Navigating
  - Displaying Alignments
  - Displaying miRNA summary
  - Displaying miRNA Secondary Structure
  - Displaying Read Count Table
  - Alignment Configuration
  - Sorting and Filtering
    - Sorting
    - Filtering
  - Managing Read Sequence
  - Managing Read Count Table
- Report
  - Displaying project summary
  - Displaying miRNA summary

Installation

User does not need to install our miRseqViewer on any OS platform. You just download it and run it on anywhere.

Mac user

When you download an archive file (.zip) from our website and unzip the file, you can see folders and files in the unzipped folder as shown below figure. The miRseqViewer basically contains three folders and a file that you certainly need to run the miRseqViewer.

config : There are three property files.
log : This is a log directory.
resources : There are 3 sub-directories. 1) data(database); 2) html; 3) images (splash)
MSV 1.0 : Executable file

Caution : These file and directories are required to run the miRseqViewer so user never delete these.

If you see a dialog as shown in the figure below after the miRseqViewer is launching, see This document in the forum will help you to resolve this issue.

Top

Windows user

When you download an archive file (.zip) from our website and unzip the file, you can see folders and files in the unzipped folder as shown below figure. The miRseqViewer basically contain 4 folders and files that you certainly need to run the miRseqViewer.

config : There are 3 property files.
log : This is a log directory.
resources : There are 3 sub-directories. 1) data(database); 2) html; 3) images (splash)
MSV 1.0.exe : Executable file

Caution : These file and directories are need to run the miRseqViewer so user never delete these.

Top

Linux user

When you download an archive file (.gz) from our website and gunzip the file, you can see folders and files in the unzipped folder as shown below figure. The miRseqViewer basically contain 6 folders and a file that you certainly need to run the miRseqViewer.

bin : Shell script to execute miRseqViewer
config : There are 3 property files.
java1.7 : Jdk1.7 for javafx library
log : This is a log directory.
resources : There are 3 sub-directories. 1) data(database); 2) html; 3) images (splash)
msv.jar : Executable jar file

Caution : These file and directories are required to run the miRseqViewer smoothly. So user never delete these.

Top